A spliced pangenome simply adds splice junction edges between exons and thus is reference-based. By contrast, for a pan-transcriptome, splice junctions are projected onto the non-reference haplotypes.

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@article{sequence, author = {Xiaoliang Wu and Alexander Kolar and Joaquin Chung and Dong Jin and Tian Zhong and Rajkumar Kettimuthu and Martin Suchara}, title = {SeQUeNCe: a customizable ...